Let me try to answer your questions in order...
1. RAW files have an extremely small thumbnail embedded in them that is absolutely useless for checking focus, etc. If you want to do a quick preview, it is much more convenient to open up the JPEG to quickly see if a shot is worth putting through RAW conversion or not. Small/fine is more than sufficient for this purpose.
2. I haven't shot time exposures with film, but I recommend using the noise reduction feature. The results are worth the extra time. I just leave it on; it is only used on exposures > 1 second or so.
3. No opinion, I havent done a serious film/digital comparison, but shooting ISO 400 is less noisy than underexposed ISO 200 and adjusting exposure in the RAW converter after the fact. In general, film is much grainier than digital for identical ISO.
4. Auto white balance will get you spot-on results about 90% of the time, and it will be fairly close the other 10%. The main trouble situations are where there are multiple light sources with different characteristics--a room lit with fluorescent lights with an open window allowing lots of sunlight in, late afternooon outdoor shots with mixtures of shade and direct sun, etc. Generally in these situations you would want to open the file twice, apply different color settings for each kind of lighting, and blend the results together--no one color setting is really appropriate for the entire image.
5. I use Adobe RGB; this setting only applies to in-camera JPEGS, so if shooting RAW it is irrelevant.
6. Sharpness is also only applicable to in-camera JPEGs. Shoot RAW, and you can sharpen however you want.
7. Get the 1 GB Microdrives; they are currently $176 each on Apricorn's site. I have 4 drives from them, so far, no problems. Microdrives have a faster data transfer rate than CF cards, but they have a 1-second spin-up delay. So they start transferring data 1 second after the CF card, but quickly make up for lost time. The buffer on the 1Ds is big enough thet the 1 second spinup delay is not an issue.
8. The manual says the screen can be changed, but I haven't tried to, so I have no idea what the risks/benefits are.